Search results
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BioLite, a Lightweight Bioinformatics Framework with Automated Tracking of Diagnostics and Provenance
Mark Howison, Nicholas A. Sinnott-Armstrong, and Casey W. Dunn, Brown University We present a new Python/C++ framework, BioLite, for implementing bioinformatics pipelines for Next-Generation Sequencing (NGS) data. BioLite tracks provenance of analyses, a ...jel - December 17, 2021 - 10:52 am
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Toward Provenance Capturing as Cross-Cutting Concern
and aims at establishing a universe of provenance. In this paper, we propose a solution concept, ...jel - December 17, 2021 - 10:52 am
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It’s About the Data: Provenance as a Tool for Assessing Data Fitness
Adriane Chapman, M. David Allen, and Barbara Blaustein, The MITRE Corporation The end goal of provenance is to assist users in understanding their data: How was it created? When? By whom? How was it manipulated? In other words, provenance is a powerful t ...jel - December 17, 2021 - 10:52 am
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A General-Purpose Provenance Library
Peter Macko and Margo Seltzer, Harvard University Most provenance capture takes place inside particular tools – a workflow engine, a database, an operating system, or an application. However, most users have an existing toolset – a collection of differen ...jel - December 17, 2021 - 11:52 am
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BURRITO: Wrapping Your Lab Notebook in Computational Infrastructure
Philip J. Guo, Stanford University; Margo Seltzer, Harvard University Researchers in fields such as bioinformatics, CS, finance, and applied math have trouble managing the numerous code and data files generated by their computational experiments, compa ...jel - December 17, 2021 - 11:52 am
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Tag-based Information Flow Analysis for Document Classification in Provenance
Health-care, is to manage and protect sensitive information effectively and efficiently. In this paper, we ... inference rules defined in this paper. This approach enables users to conveniently query to identify ...jel - December 17, 2021 - 11:52 am
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Querying Provenance for Ranking and Recommending
Zachary G. Ives, Andreas Haeberlen, and Tao Feng, University of Pennsylvania; Wolfgang Gatterbauer, Carnegie Mellon University As has been frequently observed in the literature, there is a strong connection between a derived data item’s provenance and ...jel - December 17, 2021 - 11:52 am
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Hierarchical Models of Provenance
Peter Buneman, James Cheney, and Egor V. Kostylev, University of Edinburgh There is general agreement that we need to understand provenance at various levels of granularity; however, there appears, as yet, to be no general agreement on what granularity me ...jel - December 17, 2021 - 11:52 am
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Toward Provenance-Based Security for Configuration Languages
Paul Anderson and James Cheney, University of Edinburgh Large system installations are increasingly configured using high-level, mostly-declarative languages. Often, different users contribute data that is compiled centrally and distributed to individual ...jel - December 17, 2021 - 11:52 am
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Provenance as a Security Control
Andrew Martin, John Lyle, and Cornelius Namilkuo, University of Oxford Much has been written about security and provenance. Although both have their own large areas of concern, there is a very significant intersection. One is often brought to bear upon t ...jel - December 17, 2021 - 11:52 am
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Provenance Support for Rework
University Rework occurs commonly in software development. This paper describes a simple rework example, ...jel - December 17, 2021 - 11:52 am
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Provenance Management in Databases Under Schema Evolution
management for data and metadata represents a key requirement for modern information systems. In this paper ...jel - December 17, 2021 - 11:52 am
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Towards Automated Collection of Application-Level Data Provenance
Dawood Tariq, Maisem Ali, and Ashish Gehani, SRI International Gathering data provenance at the operating system level is useful for capturing system-wide activity. However, many modern programs are complex and can perform numerous tasks concurrently. Ca ...jel - December 17, 2021 - 11:52 am
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Dependency Path Patterns as the Foundation of Access Control in Provenance-aware Systems
security policy specification and administration. This paper elaborates on this common foundation of PAC ...jel - December 17, 2021 - 12:52 pm
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Datalog as a Lingua Franca for Provenance Querying and Reasoning
paper, we propose Datalog as a “lingua franca” for representing, querying, and specifying integrity ...jel - December 17, 2021 - 12:52 pm
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Development of a System Framework for Implementation of an Enhanced Role-Based Access Control Model to Support Collaborative Processes
team collaboration and workflow. We report in this paper a generic system framework to implement the ...jel - December 17, 2021 - 3:52 am
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Neuroimage Data Sets: Rethinking Privacy Policies
Nakeisha Schimke and John Hale, Institute of Bioinformatics and Computational Biology, University of Tulsa Data sharing has been promoted as a significant step in neuroimaging-based research for over a decade, yet the vision for widespread sharing has not ...jel - December 17, 2021 - 3:52 am
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Who Wears Me? Bioimpedance as a Passive Biometric
different frequencies. In this paper we demonstrate the feasibility of our system by showing its ...jel - December 17, 2021 - 3:52 am
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Information Security of Patient-Centred Services Utilising the German Nationwide Health Information Technology Infrastructure
a fit and proper foundation for securely offering patient-centred services. In this paper, we illustrate ...jel - December 17, 2021 - 3:52 am
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Protecting Web-based Patient Portal for the Security and Privacy of Electronic Medical Records
policies in clinical environment. In this position paper, we select an open source EMR application OpenEMR ...jel - December 17, 2021 - 3:52 am
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Secure Logging and Auditing in Electronic Health Records Systems: What Can We Learn from the Payment Card Industry
should implement to promote security, user accountability, and trust. The objective of this paper is to ...jel - December 17, 2021 - 3:52 am
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Body Area Network Security: Robust Key Establishment Using Human Body Channel
Sang-Yoon Chang, Yih-Chun Hu, Hans Anderson, and Ting Fu, University of Illinois at Urbana-Champaign; Evelyn Y. L. Huang, University of Illinois at Chicago In order for two sensors within a body area network to determine they are on the same body, e.g. ...jel - December 17, 2021 - 3:52 am
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Tragedy of Anticommons in Digital Right Management of Medical Records
challenge of moving a decentralized, fragmented, paper-based healthcare system to an interconnected, ...jel - December 17, 2021 - 3:52 am
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Security Risks, Low-tech User Interfaces, and Implantable Medical Devices: A Case Study with Insulin Pump Infusion Systems
Nathanael Paul, University of Tennessee, Oak Ridge National Laboratory; Tadayoshi Kohno, University of Washington Portable implantable medical device systems are playing a larger role in modern health care. Increasing attention is now being given to th ...jel - December 17, 2021 - 3:52 am
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Accountings of Relationships
Joseph Lorenzo Hall, New York University; Benedicte Callan, University of Texas at Austin; Helen Nissenbaum, New York University We propose an orthogonal artifact to the HIPAA Privacy Rule's Accounting of Disclosure (AOD). Instead of the patient-c ...jel - December 17, 2021 - 4:52 am